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Partner fidelity and environmental filtering preserve stage‐specific turtle ant gut symbioses for over 40 million years.
Published in:
Ecological Monographs, 2023, v. 93, n. 1, p. 1, doi. 10.1002/ecm.1560
By:
- Hu, Yi;
- D'Amelio, Catherine L.;
- Béchade, Benoît;
- Cabuslay, Christian S.;
- Łukasik, Piotr;
- Sanders, Jon G.;
- Price, Shauna;
- Fanwick, Emily;
- Powell, Scott;
- Moreau, Corrie S.;
- Russell, Jacob A.
Publication type:
Article
Ant-plant mutualism: a dietary by-product of a tropical ant's macronutrient requirements.
Published in:
Ecology, 2017, v. 98, n. 12, p. 3141, doi. 10.1002/ecy.2036
By:
- Arcila Hernández, Lina M.;
- Sanders, Jon G.;
- Miller, Gabriel A.;
- Ravenscraft, Alison;
- Frederickson, Megan E.
Publication type:
Article
Taxonomic signatures of cause-specific mortality risk in human gut microbiome.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22962-y
By:
- Salosensaari, Aaro;
- Laitinen, Ville;
- Havulinna, Aki S.;
- Meric, Guillaume;
- Cheng, Susan;
- Perola, Markus;
- Valsta, Liisa;
- Alfthan, Georg;
- Inouye, Michael;
- Watrous, Jeramie D.;
- Long, Tao;
- Salido, Rodolfo A.;
- Sanders, Karenina;
- Brennan, Caitriona;
- Humphrey, Gregory C.;
- Sanders, Jon G.;
- Jain, Mohit;
- Jousilahti, Pekka;
- Salomaa, Veikko;
- Knight, Rob
Publication type:
Article
The structured diversity of specialized gut symbionts of the New World army ants.
Published in:
Molecular Ecology, 2017, v. 26, n. 14, p. 3808, doi. 10.1111/mec.14140
By:
- Łukasik, Piotr;
- Newton, Justin A.;
- Sanders, Jon G.;
- Hu, Yi;
- Moreau, Corrie S.;
- Kronauer, Daniel J. C.;
- O'Donnell, Sean;
- Koga, Ryuichi;
- Russell, Jacob A.
Publication type:
Article
By their own devices: invasive Argentine ants have shifted diet without clear aid from symbiotic microbes.
Published in:
Molecular Ecology, 2017, v. 26, n. 6, p. 1608, doi. 10.1111/mec.13991
By:
- Hu, Yi;
- Holway, David A.;
- Łukasik, Piotr;
- Chau, Linh;
- Kay, Adam D.;
- LeBrun, Edward G.;
- Miller, Katie A.;
- Sanders, Jon G.;
- Suarez, Andrew V.;
- Russell, Jacob A.
Publication type:
Article
Gut microbiota of dung beetles correspond to dietary specializations of adults and larvae.
Published in:
Molecular Ecology, 2016, v. 25, n. 24, p. 6092, doi. 10.1111/mec.13901
By:
- Shukla, Shantanu P.;
- Sanders, Jon G.;
- Byrne, Marcus J.;
- Pierce, Naomi E.
Publication type:
Article
Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes.
Published in:
Molecular Ecology, 2014, v. 23, n. 6, p. 1268, doi. 10.1111/mec.12611
By:
- Sanders, Jon G.;
- Powell, Scott;
- Kronauer, Daniel J. C.;
- Vasconcelos, Heraldo L.;
- Frederickson, Megan E.;
- Pierce, Naomi E.
Publication type:
Article
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13443-4
By:
- Zhu, Qiyun;
- Mai, Uyen;
- Pfeiffer, Wayne;
- Janssen, Stefan;
- Asnicar, Francesco;
- Sanders, Jon G.;
- Belda-Ferre, Pedro;
- Al-Ghalith, Gabriel A.;
- Kopylova, Evguenia;
- McDonald, Daniel;
- Kosciolek, Tomasz;
- Yin, John B.;
- Huang, Shi;
- Salam, Nimaichand;
- Jiao, Jian-Yu;
- Wu, Zijun;
- Xu, Zhenjiang Z.;
- Cantrell, Kalen;
- Yang, Yimeng;
- Sayyari, Erfan
Publication type:
Article
Assessing co‐diversification in host‐associated microbiomes.
Published in:
Journal of Evolutionary Biology, 2023, v. 36, n. 12, p. 1659, doi. 10.1111/jeb.14221
By:
- Moeller, Andrew H.;
- Sanders, Jon G.;
- Sprockett, Daniel D.;
- Landers, Abigail
Publication type:
Article
Unraveling the processes shaping mammalian gut microbiomes over evolutionary time.
Published in:
Nature Communications, 2017, v. 8, n. 2, p. 14319, doi. 10.1038/ncomms14319
By:
- Groussin, Mathieu;
- Mazel, Florent;
- Sanders, Jon G.;
- Smillie, Chris S.;
- Lavergne, Sébastien;
- Thuiller, Wilfried;
- Alm, Eric J.
Publication type:
Article
Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores.
Published in:
Nature Communications, 2015, v. 6, n. 9, p. 8285, doi. 10.1038/ncomms9285
By:
- Sanders, Jon G.;
- Beichman, Annabel C.;
- Roman, Joe;
- Scott, Jarrod J.;
- Emerson, David;
- McCarthy, James J.;
- Girguis, Peter R.
Publication type:
Article
A low-cost genomics workflow enables isolate screening and strain-level analyses within microbiomes.
Published in:
Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02777-w
By:
- Sanders, Jon G.;
- Yan, Weiwei;
- Mjungu, Deus;
- Lonsdorf, Elizabeth V.;
- Hart, John A.;
- Sanz, Crickette M.;
- Morgan, David B.;
- Peeters, Martine;
- Hahn, Beatrice H.;
- Moeller, Andrew H.
Publication type:
Article
Genome Evolution of Bartonellaceae Symbionts of Ants at the Opposite Ends of the Trophic Scale.
Published in:
Genome Biology & Evolution, 2018, v. 10, n. 7, p. 1687, doi. 10.1093/gbe/evy126
By:
- Bisch, Gaelle;
- Neuvonen, Minna-Maria;
- Pierce, Naomi E;
- Russell, Jacob A;
- Koga, Ryuichi;
- Sanders, Jon G;
- Łukasik, Piotr;
- Andersson, Siv G E
Publication type:
Article
The human microbiome in evolution.
Published in:
BMC Biology, 2017, v. 15, p. 1, doi. 10.1186/s12915-017-0454-7
By:
- Davenport, Emily R.;
- Sanders, Jon G.;
- Se Jin Song;
- Amato, Katherine R.;
- Clark, Andrew G.;
- Knight, Rob
Publication type:
Article
DNA extraction protocols cause differences in 16S rRNA amplicon sequencing efficiency but not in community profile composition or structure.
Published in:
MicrobiologyOpen, 2014, v. 3, n. 6, p. 910, doi. 10.1002/mbo3.216
By:
- Rubin, Benjamin E. R.;
- Sanders, Jon G.;
- Hampton‐Marcell, Jarrad;
- Owens, Sarah M.;
- Gilbert, Jack A.;
- Moreau, Corrie S.
Publication type:
Article
Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals.
Published in:
2020
By:
- Palmu, Joonatan;
- Salosensaari, Aaro;
- Havulinna, Aki S.;
- Cheng, Susan;
- Inouye, Michael;
- Jain, Mohit;
- Salido, Rodolfo A.;
- Sanders, Karenina;
- Brennan, Caitriona;
- Humphrey, Gregory C.;
- Sanders, Jon G.;
- Vartiainen, Erkki;
- Laatikainen, Tiina;
- Jousilahti, Pekka;
- Salomaa, Veikko;
- Knight, Rob;
- Lahti, Leo;
- Niiranen, Teemu J.
Publication type:
journal article
Program note: Cladescan, a program for automated phylogenetic sensitivity analysis.
Published in:
2010
By:
- Sanders, Jon G.
Publication type:
Letter
Improving saliva shotgun metagenomics by chemical host DNA depletion.
Published in:
Microbiome, 2018, v. 6, p. 1, doi. 10.1186/s40168-018-0426-3
By:
- Marotz, Clarisse A.;
- Sanders, Jon G.;
- Zuniga, Cristal;
- Zaramela, Livia S.;
- Knight, Rob;
- Zengler, Karsten
Publication type:
Article
Predictable and host‐species specific humanization of the gut microbiota in captive primates.
Published in:
Molecular Ecology, 2021, v. 30, n. 15, p. 3677, doi. 10.1111/mec.15994
By:
- Houtz, Jennifer L.;
- Sanders, Jon G.;
- Denice, Anthony;
- Moeller, Andrew H.
Publication type:
Article
Author Correction: Herbivorous turtle ants obtain essential nutrients from a conserved nitrogenrecycling gut microbiome.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-04935-w
By:
- Yi Hu;
- Sanders, Jon G.;
- Łukasik, Piotr;
- D’Amelio, Catherine L.;
- Millar, John S.;
- Vann, David R.;
- Lan, Yemin;
- Newton, Justin A.;
- Schotanus, Mark;
- Kronauer, Daniel J. C.;
- Pierce, Naomi E.;
- Moreau, Corrie S.;
- Wertz, John T.;
- Engel, Philipp;
- Russell, Jacob A.
Publication type:
Article
Herbivorous turtle ants obtain essential nutrients from a conserved nitrogen-recycling gut microbiome.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03357-y
By:
- Yi Hu;
- Sanders, Jon G.;
- Łukasik, Piotr;
- D'Amelio, Catherine L.;
- Millar, John S.;
- Vann, David R.;
- Yemin Lan;
- Newton, Justin A.;
- Schotanus, Mark;
- Kronauer, Daniel J. C.;
- Pierce, Naomi E.;
- Moreau, Corrie S.;
- Wertz, John T.;
- Engel, Philipp;
- Russell, Jacob A.
Publication type:
Article
Dramatic Differences in Gut Bacterial Densities Correlate with Diet and Habitat in Rainforest Ants.
Published in:
Integrative & Comparative Biology, 2017, v. 57, n. 4, p. 705, doi. 10.1093/icb/icx088
By:
- Sanders, Jon G.;
- Łukasik, Piotr;
- Frederickson, Megan E.;
- Russell, Jacob A.;
- Ryuichi Koga;
- Knight, Rob;
- Pierce, Naomi E.
Publication type:
Article
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.
Published in:
Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1834-9
By:
- Sanders, Jon G.;
- Nurk, Sergey;
- Salido, Rodolfo A.;
- Minich, Jeremiah;
- Xu, Zhenjiang Z.;
- Zhu, Qiyun;
- Martino, Cameron;
- Fedarko, Marcus;
- Arthur, Timothy D.;
- Chen, Feng;
- Boland, Brigid S.;
- Humphrey, Greg C.;
- Brennan, Caitriona;
- Sanders, Karenina;
- Gaffney, James;
- Jepsen, Kristen;
- Khosroheidari, Mahdieh;
- Green, Cliff;
- Liyanage, Marlon;
- Dang, Jason W.
Publication type:
Article
Culture‐enriched community profiling improves resolution of the vertebrate gut microbiota.
Published in:
Molecular Ecology Resources, 2022, v. 22, n. 1, p. 122, doi. 10.1111/1755-0998.13456
By:
- Goldman, Samantha L.;
- Sanders, Jon G.;
- Yan, Weiwei;
- Denice, Anthony;
- Cornwall, Margaret;
- Ivey, Kathleen N.;
- Taylor, Emily N.;
- Gunderson, Alex R.;
- Sheehan, Michael J.;
- Mjungu, Deus;
- Lonsdorf, Elizabeth V.;
- Pusey, Anne E.;
- Hahn, Beatrice H.;
- Moeller, Andrew H.
Publication type:
Article
The genetic basis for adaptation of model-designed syntrophic co-cultures.
Published in:
PLoS Computational Biology, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006213
By:
- Lloyd, Colton J.;
- King, Zachary A.;
- Sandberg, Troy E.;
- Hefner, Ying;
- Olson, Connor A.;
- Phaneuf, Patrick V.;
- O’Brien, Edward J.;
- Sanders, Jon G.;
- Salido, Rodolfo A.;
- Sanders, Karenina;
- Brennan, Caitriona;
- Humphrey, Gregory;
- Knight, Rob;
- Feist, Adam M.
Publication type:
Article
The tip of the tail: molecular identification of seahorses for sale in apothecary shops and curio stores in California.
Published in:
Conservation Genetics, 2008, v. 9, n. 1, p. 65, doi. 10.1007/s10592-007-9308-0
By:
- Sanders, Jon G.;
- Cribbs, Jennifer E.;
- Fienberg, Harris G.;
- Hulburd, Greg C.;
- Katz, Laure S.;
- Palumbi, Stephen R.
Publication type:
Article
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16366-7
By:
- Asnicar, Francesco;
- Thomas, Andrew Maltez;
- Beghini, Francesco;
- Mengoni, Claudia;
- Manara, Serena;
- Manghi, Paolo;
- Zhu, Qiyun;
- Bolzan, Mattia;
- Cumbo, Fabio;
- May, Uyen;
- Sanders, Jon G.;
- Zolfo, Moreno;
- Kopylova, Evguenia;
- Pasolli, Edoardo;
- Knight, Rob;
- Mirarab, Siavash;
- Huttenhower, Curtis;
- Segata, Nicola
Publication type:
Article

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