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Protein Design with Deep Learning.
- Published in:
- International Journal of Molecular Sciences, 2021, v. 22, n. 21, p. 11741, doi. 10.3390/ijms222111741
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- Article
A Comparative Study to Decipher the Structural and Dynamics Determinants Underlying the Activity and Thermal Stability of GH-11 Xylanases.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 11, p. 5961, doi. 10.3390/ijms22115961
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- Publication type:
- Article
A composite genetic map of the parasitoid wasp Trichogamma brassicae based on RAPD markers.
- Published in:
- Genetics, 1998, v. 150, n. 1, p. 275, doi. 10.1093/genetics/150.1.275
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- Publication type:
- Article
NOGOOD RECORDING FOR STATIC AND DYNAMIC CONSTRAINT SATISFACTION PROBLEMS.
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- International Journal on Artificial Intelligence Tools, 1994, v. 3, n. 2, p. 187, doi. 10.1142/S0218213094000108
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- Publication type:
- Article
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.
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- PLoS Genetics, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pgen.1006777
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- Publication type:
- Article
Gene Regulatory Network Reconstruction Using Bayesian Networks, the Dantzig Selector, the Lasso and Their Meta-Analysis.
- Published in:
- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0029165
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- Publication type:
- Article
Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium.
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- PLoS Pathogens, 2022, v. 18, n. 4, p. 1, doi. 10.1371/journal.ppat.1010425
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- Publication type:
- Article
Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome.
- Published in:
- BMC Genomics, 2007, v. 8, p. 401, doi. 10.1186/1471-2164-8-401
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- Publication type:
- Article
High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly.
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- BMC Genomics, 2007, v. 8, p. 310, doi. 10.1186/1471-2164-8-310
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- Publication type:
- Article
LeARN: a platform for detecting, clustering and annotating non-coding RNAs.
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- 2008
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- Publication type:
- Product Review
Integrating alternative splicing detection into gene prediction.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 25, doi. 10.1186/1471-2105-6-25
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- Publication type:
- Article
EUGÈNE'HOM: a generic similarity-based gene finder using multiple homologous sequences.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3742, doi. 10.1093/nar/gkg586
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- Publication type:
- Article
FrameD: a flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3738, doi. 10.1093/nar/gkg610
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- Publication type:
- Article
Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis.
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- Nucleic Acids Research, 2002, v. 30, n. 24, p. 5579, doi. 10.1093/nar/gkf685
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- Publication type:
- Article
Current methods of gene prediction, their strengths and weaknesses.
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- Nucleic Acids Research, 2002, v. 30, n. 19, p. 4103, doi. 10.1093/nar/gkf543
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- Publication type:
- Article
Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods †.
- Published in:
- Algorithms, 2021, v. 14, n. 6, p. 168, doi. 10.3390/a14060168
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- Publication type:
- Article
Bounds Arc Consistency for Weighted CSPs.
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- Journal of Artificial Intelligence Research, 2009, v. 35, p. 593, doi. 10.1613/jair.2797
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- Publication type:
- Article
An Algebraic Graphical Model for Decision with Uncertainties, Feasibilities, and Utilities.
- Published in:
- Journal of Artificial Intelligence Research, 2007, v. 29, p. 421, doi. 10.1613/jair.2151
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- Publication type:
- Article
Molecular flexibility in computational protein design: an algorithmic perspective.
- Published in:
- PEDS: Protein Engineering, Design & Selection, 2021, v. 34, p. 1, doi. 10.1093/protein/gzab011
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- Publication type:
- Article
Rearranged gene order between pig and human in a QTL region on SSC 7.
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- Mammalian Genome, 2003, v. 14, n. 1, p. 71, doi. 10.1007/s00335-002-3034-1
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- Article
Carhta Gene: multipopulation integrated genetic and radiation hybrid mapping.
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- Bioinformatics, 2005, v. 21, n. 8, p. 1703
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- Publication type:
- Article
Iterated local search with partition crossover for computational protein design.
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- Proteins, 2021, v. 89, n. 11, p. 1522, doi. 10.1002/prot.26174
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- Publication type:
- Article
Balancing exploration and exploitation in population-based sampling improves fragment-based de novo protein structure prediction.
- Published in:
- Proteins, 2017, v. 85, n. 5, p. 852, doi. 10.1002/prot.25244
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- Publication type:
- Article
Positive multistate protein design.
- Published in:
- Bioinformatics, 2020, v. 36, n. 1, p. 122, doi. 10.1093/bioinformatics/btz497
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- Publication type:
- Article
structural homology approach for computational protein design with flexible backbone.
- Published in:
- Bioinformatics, 2019, v. 35, n. 14, p. 2418, doi. 10.1093/bioinformatics/bty975
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- Publication type:
- Article
Cost function network-based design of protein–protein interactions: predicting changes in binding affinity.
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- Bioinformatics, 2018, v. 34, n. 15, p. 2581, doi. 10.1093/bioinformatics/bty092
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- Publication type:
- Article
EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes.
- Published in:
- Bioinformatics, 2014, v. 30, n. 18, p. 2659, doi. 10.1093/bioinformatics/btu366
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- Publication type:
- Article
A new framework for computational protein design through cost function network optimization.
- Published in:
- Bioinformatics, 2013, v. 29, n. 17, p. 2129, doi. 10.1093/bioinformatics/btt374
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- Publication type:
- Article
FrameDP: sensitive peptide detection on noisy matured sequences.
- Published in:
- Bioinformatics, 2009, v. 25, n. 5, p. 670, doi. 10.1093/bioinformatics/btp024
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- Publication type:
- Article
Next-Generation Annotation of Prokaryotic Genomes with EuGene-P: Application to Sinorhizobium meliloti 2011.
- Published in:
- DNA Research, 2013, v. 20, n. 4, p. 339, doi. 10.1093/dnares/dst014
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- Publication type:
- Article
Fast search algorithms for computational protein design.
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- Journal of Computational Chemistry, 2016, v. 37, n. 12, p. 1048, doi. 10.1002/jcc.24290
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- Publication type:
- Article
Complete combinatorial mutational enumeration of a protein functional site enables sequence‐landscape mapping and identifies highly‐mutated variants that retain activity.
- Published in:
- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 8, p. 1, doi. 10.1002/pro.5109
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- Article