Found: 53
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Prediction of phosphorylation sites using SVMs.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3179, doi. 10.1093/bioinformatics/bth382
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BioSilico: an integrated metabolic database system.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3270, doi. 10.1093/bioinformatics/bth363
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A comparative method for identification of gene structures and alternatively spliced variants.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3064, doi. 10.1093/bioinformatics/bth368
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BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3289, doi. 10.1093/bioinformatics/bth378
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Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2911, doi. 10.1093/bioinformatics/bth374
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A model-based optimization framework for the inference on gene regulatory networks from DNA array data.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3221, doi. 10.1093/bioinformatics/bth389
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Computational prediction of RNA editing sites.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3214, doi. 10.1093/bioinformatics/bth387
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BioRAT: extracting biological information from full-length papers.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3206, doi. 10.1093/bioinformatics/bth386
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Letter to the Editor.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2903, doi. 10.1093/bioinformatics/bth385
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Normalization of microarray data using a spatial mixed model analysis which includes splines.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3196, doi. 10.1093/bioinformatics/bth384
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Systematic benchmarking of microarray data classification: assessing the role of non-linearity and dimensionality reduction.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3185, doi. 10.1093/bioinformatics/bth383
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Variance-modeled posterior inference of microarray data: detecting gene-expression changes in 3T3-L1 adipocytes.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3108, doi. 10.1093/bioinformatics/bth371
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- Article
Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: a meta-analysis of three microarray studies.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3166, doi. 10.1093/bioinformatics/bth381
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- Article
The UniMarker (UM) method for synteny mapping of large genomes.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3156, doi. 10.1093/bioinformatics/bth380
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- Article
A statistical method for identifying differential gene–gene co-expression patterns.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3146, doi. 10.1093/bioinformatics/bth379
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Comparison of probabilistic combination methods for protein secondary structure prediction.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3099, doi. 10.1093/bioinformatics/bth370
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Phan3D: design of biological phantoms in 3D electron microscopy.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3286, doi. 10.1093/bioinformatics/bth377
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A web portal for classification of expression data using maximal margin linear programming.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3284, doi. 10.1093/bioinformatics/bth376
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HumanMSD and MouseMSD: generating genetic maps for human and murine microsatellite markers.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3280, doi. 10.1093/bioinformatics/bth375
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Constrained clusters of gene expression profiles with pathological features.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3137, doi. 10.1093/bioinformatics/bth373
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Standardization and denoising algorithms for mass spectra to classify whole-organism bacterial specimens.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3128, doi. 10.1093/bioinformatics/bth372
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PTGL—a web-based database application for protein topologies.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3277, doi. 10.1093/bioinformatics/bth367
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POINT: a database for the prediction of protein–protein interactions based on the orthologous interactome.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3273, doi. 10.1093/bioinformatics/bth366
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QuickJoin—fast neighbour-joining tree reconstruction.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3261, doi. 10.1093/bioinformatics/bth359
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Developing optimal non-linear scoring function for protein design.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3080
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The CRASSS plug-in for integrating annotation data with hierarchical clustering results.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3266, doi. 10.1093/bioinformatics/bth362
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Taverna: a tool for the composition and enactment of bioinformatics workflows.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3045, doi. 10.1093/bioinformatics/bth361
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SNPicker: a graphical tool for primer picking in designing mutagenic endonuclease restriction assays.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3263, doi. 10.1093/bioinformatics/bth360
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Predicting the efficacy of short oligonucleotides in antisense and RNAi experiments with boosted genetic programming.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3055, doi. 10.1093/bioinformatics/bth364
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TMRPres2D: high quality visual representation of transmembrane protein models.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3258
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An entity tagger for recognizing acquired genomic variations in cancer literature.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3249, doi. 10.1093/bioinformatics/bth350
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Sample classification from protein mass spectrometry, by ‘peak probability contrasts’.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3034, doi. 10.1093/bioinformatics/bth357
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Biologically valid linear factor models of gene expression.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3021, doi. 10.1093/bioinformatics/bth354
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Automatic annotation of organellar genomes with DOGMA.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3252, doi. 10.1093/bioinformatics/bth352
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Protein complex prediction via cost-based clustering.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3013, doi. 10.1093/bioinformatics/bth351
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CTRD: a fast applet for computing signed translocation distance between genomes.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3256, doi. 10.1093/bioinformatics/bth356
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lga972: a cross-platform application for optimizing LD studies using a genetic algorithm.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3244, doi. 10.1093/bioinformatics/bth348
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Java Treeview—extensible visualization of microarray data.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3246, doi. 10.1093/bioinformatics/bth349
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Picky: oligo microarray design for large genomes.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2893, doi. 10.1093/bioinformatics/bth347
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Quantitative DNA methylation analysis based on four-dye trace data from direct sequencing of PCR amplificates.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3005, doi. 10.1093/bioinformatics/bth346
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Visualizations for taxonomic and phylogenetic trees.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2997, doi. 10.1093/bioinformatics/bth345
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Supervised machine learning techniques for the classification of metabolic disorders in newborns.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2985, doi. 10.1093/bioinformatics/bth343
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Comparative analysis of protein unfoldedness in human housekeeping and non-housekeeping proteins.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2904, doi. 10.1093/bioinformatics/bth344
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EST clustering error evaluation and correction.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2973, doi. 10.1093/bioinformatics/bth342
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GOLDsurfer: three dimensional display of linkage disequilibrium.
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- Bioinformatics, 2004, v. 20, n. 17, p. 3241, doi. 10.1093/bioinformatics/bth341
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Transmembrane proteins in the Protein Data Bank: identification and classification.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2964, doi. 10.1093/bioinformatics/bth340
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A spline function approach for detecting differentially expressed genes in microarray data analysis.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2954
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Bayesian integrated functional analysis of microarray data.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2943
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Reconstruction of gene networks using Bayesian learning and manipulation experiments.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2934, doi. 10.1093/bioinformatics/bth337
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Mean and variance of the Gibbs free energy of oligonucleotides in the nearest neighbor model under varying conditions.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2928, doi. 10.1093/bioinformatics/bth334
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