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Unsupervised Bayesian Ising Approximation for decoding neural activity and other biological dictionaries.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.68192
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- Article
Coincidences and Estimation of Entropies of Random Variables with Large Cardinalities.
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- Entropy, 2011, v. 13, n. 12, p. 2013, doi. 10.3390/e13122013
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Constrained brain volume in an efficient coding model explains the fraction of excitatory and inhibitory neurons in sensory cortices.
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- PLoS Computational Biology, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pcbi.1009642
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Inferring phenomenological models of first passage processes.
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- PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008740
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Model Cortical Association Fields Account for the Time Course and Dependence on Target Complexity of Human Contour Perception.
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- PLoS Computational Biology, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pcbi.1002162
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Neural Coding of Natural Stimuli: Information at Sub-Millisecond Resolution.
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- PLoS Computational Biology, 2008, v. 4, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000025
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- Article
Predictive Information in a Nonequilibrium Critical Model.
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- Journal of Statistical Physics, 2013, v. 153, n. 3, p. 442, doi. 10.1007/s10955-013-0833-6
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- Article
Speeding up Evolutionary Search by Small Fitness Fluctuations.
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- Journal of Statistical Physics, 2011, v. 144, n. 2, p. 367, doi. 10.1007/s10955-011-0199-6
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- Article
q-bio 2007: a watershed moment in modern biology.
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- Molecular Systems Biology, 2007, v. 3, n. 1, p. 1, doi. 10.1038/msb4100193
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- Article
Reconstruction of Metabolic Networks from High-Throughput Metabolite Profiling Data.
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- Annals of the New York Academy of Sciences, 2007, v. 1115, p. 102, doi. 10.1196/annals.1407.013
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Process Pathway Inference via Time Series Analysis.
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- Experimental Mechanics, 2003, v. 43, n. 3, p. 361, doi. 10.1007/BF02410536
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Automated adaptive inference of phenomenological dynamical models.
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- Nature Communications, 2015, v. 6, n. 8, p. 8133, doi. 10.1038/ncomms9133
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- Article
Efficient Inference of Parsimonious Phenomenological Models of Cellular Dynamics Using S-Systems and Alternating Regression.
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- PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0119821
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- Article
Director Field Model of the Primary Visual Cortex for Contour Detection.
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- PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0108991
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Genotype to Phenotype Mapping and the Fitness Landscape of the <i>E. coli lac</i> Promoter
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- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0061570
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Growth of bacteria in 3-d colonies.
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- PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005679
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- Article
Simple biochemical networks allow accurate sensing of multiple ligands with a single receptor.
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- PLoS Computational Biology, 2017, v. 13, n. 4, p. 1, doi. 10.1371/journal.pcbi.1005490
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Stereotypical Escape Behavior in Caenorhabditis elegans Allows Quantification of Effective Heat Stimulus Level.
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- PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005262
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Neural criticality from effective latent variables.
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- eLife, 2024, p. 1, doi. 10.7554/eLife.89337
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- Article
Millisecond-Scale Motor Encoding in a Cortical Vocal Area.
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- PLoS Biology, 2014, v. 12, n. 12, p. 1, doi. 10.1371/journal.pbio.1002018
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Genome-wide identification of post-translational modulators of transcription factor activity in human B cells.
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- Nature Biotechnology, 2009, v. 27, n. 9, p. 829, doi. 10.1038/nbt.1563
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Randomly connected networks generate emergent selectivity and predict decoding properties of large populations of neurons.
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- PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007875
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On the Sufficiency of Pairwise Interactions in Maximum Entropy Models of Networks.
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- Journal of Statistical Physics, 2016, v. 162, n. 5, p. 1294, doi. 10.1007/s10955-016-1456-5
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- Article