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Editorial: Structure and function of trans-membrane proteins.
- Published in:
- 2024
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- Publication type:
- Editorial
Model of the external force field for the protein folding process -- the role of prefoldin.
- Published in:
- Frontiers in Chemistry, 2024, p. 01, doi. 10.3389/fchem.2024.1342434
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- Publication type:
- Article
The Contribution of Hydrophobic Interactions to Conformational Changes of Inward/Outward Transmembrane Transport Proteins.
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- Membranes, 2022, v. 12, n. 12, p. 1212, doi. 10.3390/membranes12121212
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- Publication type:
- Article
Dependence of Protein Structure on Environment: FOD Model Applied to Membrane Proteins.
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- Membranes, 2022, v. 12, n. 1, p. 50, doi. 10.3390/membranes12010050
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- Publication type:
- Article
The Functional Significance of Hydrophobic Residue Distribution in Bacterial Beta-Barrel Transmembrane Proteins.
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- Membranes, 2021, v. 11, n. 8, p. 580, doi. 10.3390/membranes11080580
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- Publication type:
- Article
Propagation of Fibrillar Structural Forms in Proteins Stopped by Naturally Occurring Short Polypeptide Chain Fragments.
- Published in:
- Pharmaceuticals (14248247), 2017, v. 10, n. 4, p. 89, doi. 10.3390/ph10040089
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- Publication type:
- Article
The Status of Edge Strands in Ferredoxin-Like Fold.
- Published in:
- Symmetry (20738994), 2020, v. 12, n. 6, p. 1032, doi. 10.3390/sym12061032
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- Publication type:
- Article
Alternative Hydrophobic Core in Proteins—The Effect of Specific Synergy.
- Published in:
- Symmetry (20738994), 2020, v. 12, n. 2, p. 273, doi. 10.3390/sym12020273
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- Publication type:
- Article
Symmetry and Dissymmetry in Protein Structure—System-Coding Its Biological Specificity.
- Published in:
- Symmetry (20738994), 2019, v. 11, n. 10, p. 1215, doi. 10.3390/sym11101215
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- Publication type:
- Article
Secondary Structure in Amyloids in Relation to Their Wild Type Forms.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 1, p. 154, doi. 10.3390/ijms24010154
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- Publication type:
- Article
The Possible Mechanism of Amyloid Transformation Based on the Geometrical Parameters of Early-Stage Intermediate in Silico Model for Protein Folding.
- Published in:
- International Journal of Molecular Sciences, 2022, v. 23, n. 16, p. 9502, doi. 10.3390/ijms23169502
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- Publication type:
- Article
Congo Red as a Supramolecular Carrier System for Doxorubicin: An Approach to Understanding the Mechanism of Action.
- Published in:
- International Journal of Molecular Sciences, 2022, v. 23, n. 16, p. 8935, doi. 10.3390/ijms23168935
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- Publication type:
- Article
On the Dependence of Prion and Amyloid Structure on the Folding Environment.
- Published in:
- International Journal of Molecular Sciences, 2021, v. 22, n. 24, p. 13494, doi. 10.3390/ijms222413494
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- Publication type:
- Article
In Silico Modeling of the Influence of Environment on Amyloid Folding Using FOD-M Model.
- Published in:
- International Journal of Molecular Sciences, 2021, v. 22, n. 19, p. 10587, doi. 10.3390/ijms221910587
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- Publication type:
- Article
Solubility and Aggregation of Selected Proteins Interpreted on the Basis of Hydrophobicity Distribution.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 5002, doi. 10.3390/ijms22095002
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- Publication type:
- Article
Model of Environmental Membrane Field for Transmembrane Proteins.
- Published in:
- International Journal of Molecular Sciences, 2021, v. 22, n. 7, p. 3619, doi. 10.3390/ijms22073619
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- Publication type:
- Article
Downhill, Ultrafast and Fast Folding Proteins Revised.
- Published in:
- International Journal of Molecular Sciences, 2020, v. 21, n. 20, p. 7632, doi. 10.3390/ijms21207632
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- Publication type:
- Article
The Structure of Amyloid Versus the Structure of Globular Proteins.
- Published in:
- International Journal of Molecular Sciences, 2020, v. 21, n. 13, p. 4683, doi. 10.3390/ijms21134683
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- Publication type:
- Article
Different Synergy in Amyloids and Biologically Active Forms of Proteins.
- Published in:
- International Journal of Molecular Sciences, 2019, v. 20, n. 18, p. 4436, doi. 10.3390/ijms20184436
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- Publication type:
- Article
Filamentous Aggregates of Tau Proteins Fulfil Standard Amyloid Criteria Provided by the Fuzzy Oil Drop (FOD) Model.
- Published in:
- International Journal of Molecular Sciences, 2018, v. 19, n. 10, p. 2910, doi. 10.3390/ijms19102910
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- Publication type:
- Article
Structural Interface Forms and Their Involvement in Stabilization of Multidomain Proteins or Protein Complexes.
- Published in:
- International Journal of Molecular Sciences, 2016, v. 17, n. 10, p. 1741, doi. 10.3390/ijms17101741
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- Publication type:
- Article
Intermediates in the Protein Folding Process: A Computational Model.
- Published in:
- International Journal of Molecular Sciences, 2011, v. 12, n. 8, p. 4850, doi. 10.3390/ijms11084850
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- Publication type:
- Article
Chaperonin Structure -- The Large Multi-Subunit Protein Complex.
- Published in:
- International Journal of Molecular Sciences, 2009, v. 10, n. 3, p. 844, doi. 10.3390/ijms10030844
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- Publication type:
- Article
In silico Structural Study of Random Amino Acid Sequence Proteins Not Present in Nature.
- Published in:
- Chemistry & Biodiversity, 2009, v. 6, n. 12, p. 2311, doi. 10.1002/cbdv.200800338
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- Publication type:
- Article
Is the hydrophobic core a universal structural element in proteins?
- Published in:
- Journal of Molecular Modeling, 2017, v. 23, n. 7, p. 1, doi. 10.1007/s00894-017-3367-z
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- Publication type:
- Article
The use of supramolecular structures as protein ligands.
- Published in:
- Journal of Molecular Modeling, 2013, v. 19, n. 11, p. 4731, doi. 10.1007/s00894-012-1744-1
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- Publication type:
- Article
Hypothetical in silico model of the early-stage intermediate in protein folding.
- Published in:
- Journal of Molecular Modeling, 2013, v. 19, n. 10, p. 4259, doi. 10.1007/s00894-013-1909-6
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- Publication type:
- Article
Fuzzy oil drop model to interpret the structure of antifreeze proteins and their mutants.
- Published in:
- Journal of Molecular Modeling, 2012, v. 18, n. 1, p. 229, doi. 10.1007/s00894-011-1033-4
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- Publication type:
- Article
The Use of Rigid, Fibrillar Congo Red Nanostructures for Scaffolding Protein Assemblies and Inducing the Formation of Amyloid-like Arrangement of Molecules.
- Published in:
- Chemical Biology & Drug Design, 2007, v. 70, n. 6, p. 491, doi. 10.1111/j.1747-0285.2007.00589.x
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- Publication type:
- Article
The Indirect Generation of Long-distance Structural Changes in Antibodies upon their Binding to Antigen.
- Published in:
- Chemical Biology & Drug Design, 2006, v. 68, n. 5, p. 276, doi. 10.1111/j.1747-0285.2006.00448.x
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- Publication type:
- Article
Contribution to the Prediction of the Fold Code: Application to Immunoglobulin and Flavodoxin Cases.
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- PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0125098
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- Publication type:
- Article
The use of the Congo red-related dye DBACR to recognize the heavy chain-derived abnormality of myeloma immunoglobulins.
- Published in:
- Archivum Immunologiae & Therapiae Experimentalis, 2006, v. 54, n. 3, p. 217, doi. 10.1007/s00005-006-0024-0
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- Publication type:
- Article
Application of the fuzzy-oil-drop model to membrane protein simulation.
- Published in:
- Proteins, 2009, v. 77, n. 2, p. 378, doi. 10.1002/prot.22443
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- Publication type:
- Article
Analysis of correlated domain motions in IgG light chain reveals possible mechanisms of immunological signal transduction.
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- Proteins, 2005, v. 59, n. 3, p. 545, doi. 10.1002/prot.20434
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- Publication type:
- Article
Conformational subspace in simulation of early-stage protein folding.
- Published in:
- Proteins, 2004, v. 55, n. 1, p. 115, doi. 10.1002/prot.20002
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- Publication type:
- Article
Role of environmental specificity in CASP results.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05559-8
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- Publication type:
- Article
Ab initio protein structure prediction: the necessary presence of external force field as it is delivered by Hsp40 chaperone.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05545-0
- By:
- Publication type:
- Article
Structure and Location of Protein Sites Binding Self-Associated Congo Red Molecules with Intercalated Drugs as Compact Ligands—Theoretical Studies.
- Published in:
- Biomolecules (2218-273X), 2021, v. 11, n. 4, p. 501, doi. 10.3390/biom11040501
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- Publication type:
- Article
Structure of the Hydrophobic Core Determines the 3D Protein Structure—Verification by Single Mutation Proteins.
- Published in:
- Biomolecules (2218-273X), 2020, v. 10, n. 5, p. 767, doi. 10.3390/biom10050767
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- Publication type:
- Article
Model of Early Stage Intermediate in Respect to Its Final Structure.
- Published in:
- Biomolecules (2218-273X), 2019, v. 9, n. 12, p. 866, doi. 10.3390/biom9120866
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- Publication type:
- Article
Protein folding vs. COVID-19 and the Mediterranean diet.
- Published in:
- Bio-Algorithms & Med-Systems, 2020, v. 16, n. 2, p. 1, doi. 10.1515/bams-2020-0029
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- Publication type:
- Article
Personalized precision medicine.
- Published in:
- Bio-Algorithms & Med-Systems, 2019, v. 15, n. 4, p. N.PAG, doi. 10.1515/bams-2019-0047
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- Publication type:
- Article
The living organism: evolutionary design or an accident.
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- Bio-Algorithms & Med-Systems, 2019, v. 15, n. 3, p. N.PAG, doi. 10.1515/bams-2019-0035
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- Publication type:
- Article
Backbone dihedral angles prediction servers for protein early-stage structure prediction.
- Published in:
- Bio-Algorithms & Med-Systems, 2019, v. 15, n. 4, p. N.PAG, doi. 10.1515/bams-2019-0034
- By:
- Publication type:
- Article
Aggregation-promoting conditions necessary to create the complexes by acylphosphatase from the hyperthermophile Sulfolobus solfataricus.
- Published in:
- Bio-Algorithms & Med-Systems, 2019, v. 15, n. 2, p. N.PAG, doi. 10.1515/bams-2019-0023
- By:
- Publication type:
- Article
Fragment Aβ(18-41) presented within the CDR3 loop region of a shark immunoglobulin new antigen receptor single-variable domain antibody analyzed based on the fuzzy oil drop model.
- Published in:
- Bio-Algorithms & Med-Systems, 2018, v. 14, n. 3, p. N.PAG, doi. 10.1515/bams-2018-0028
- By:
- Publication type:
- Article
Comparison of the structure of Aβ(1-40) amyloid with the one in complex with polyphenol ε-viniferin glucoside (EVG).
- Published in:
- Bio-Algorithms & Med-Systems, 2018, v. 14, n. 2, p. N.PAG, doi. 10.1515/bams-2018-0008
- By:
- Publication type:
- Article
Chain-chain complexation and heme binding in haemoglobin with respect to the hydrophobic core structure.
- Published in:
- Bio-Algorithms & Med-Systems, 2017, v. 13, n. 4, p. 179, doi. 10.1515/bams-2017-0024
- By:
- Publication type:
- Article
Chromatin 3D - will it make understanding of cancer transformation finally possible?
- Published in:
- Bio-Algorithms & Med-Systems, 2018, v. 14, n. 1, p. 1, doi. 10.1515/bams-2018-0002
- By:
- Publication type:
- Article
Mechanism of ligand binding - PDZ domain taken as example.
- Published in:
- Bio-Algorithms & Med-Systems, 2017, v. 13, n. 4, p. 175, doi. 10.1515/bams-2017-0022
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- Publication type:
- Article