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Genetic Underpinnings of Fasting and Oral Glucose-stimulated Based Insulin Sensitivity Indices.
Published in:
Journal of Clinical Endocrinology & Metabolism, 2024, v. 109, n. 11, p. 2754, doi. 10.1210/clinem/dgae275
By:
- Suleman, Sufyan;
- Madsen, Anne L;
- Ängquist, Lars H;
- Schubert, Mikkel;
- Linneberg, Allan;
- Loos, Ruth J F;
- Hansen, Torben;
- Grarup, Niels
Publication type:
Article
The Evolutionary Origin and Genetic Makeup of Domestic Horses.
Published in:
Genetics, 2016, v. 204, n. 2, p. 423, doi. 10.1534/genetics.116.194860
By:
- Librado, Pablo;
- Fages, Antoine;
- Gaunitz, Charleen;
- Leonardi, Michela;
- Wagner, Stefanie;
- Khan, Naveed;
- Hanghøj, Kristian;
- Alquraishi, Saleh A.;
- Alfarhan, Ahmed H.;
- Al-Rasheid, Khaled A.;
- Sarkissian, Clio Der;
- Schubert, Mikkel;
- Orlando, Ludovic
Publication type:
Article
Genome-wide association study identifies host genetic variants influencing oral microbiota diversity and metabolic health.
Published in:
Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-65538-8
By:
- Stankevic, Evelina;
- Kern, Timo;
- Borisevich, Dmitrii;
- Poulsen, Casper Sahl;
- Madsen, Anne Lundager;
- Hansen, Tue Haldor;
- Jonsson, Anna;
- Schubert, Mikkel;
- Nygaard, Nikoline;
- Nielsen, Trine;
- Belstrøm, Daniel;
- Ahluwalia, Tarunveer S.;
- Witte, Daniel R.;
- Grarup, Niels;
- Arumugam, Manimozhiyan;
- Pedersen, Oluf;
- Hansen, Torben
Publication type:
Article
Improving ancient DNA read mapping against modern reference genomes.
Published in:
BMC Genomics, 2012, v. 13, n. 1, p. 178, doi. 10.1186/1471-2164-13-178
By:
- Schubert, Mikkel;
- Ginolhac, Aurelien;
- Lindgreen, Stinus;
- Thompson, John F.;
- AL-Rasheid, Khaled A.S.;
- Willerslev, Eske;
- Krogh, Anders;
- Orlando, Ludovic
Publication type:
Article
AdapterRemoval v2: rapid adapter trimming, identification, and read merging.
Published in:
BMC Research Notes, 2016, v. 9, p. 1, doi. 10.1186/s13104-016-1900-2
By:
- Schubert, Mikkel;
- Lindgreen, Stinus;
- Orlando, Ludovic
Publication type:
Article
Identification of genetic variants associated with a wide spectrum of phenotypes clinically diagnosed as Sanfilippo and Morquio syndromes using whole genome sequencing.
Published in:
Frontiers in Genetics, 2023, p. 1, doi. 10.3389/fgene.2023.1254909
By:
- Gul, Rutaba;
- Firasat, Sabika;
- Schubert, Mikkel;
- Ullah, Asmat;
- Peña, Elionora;
- Thuesen, Anne C. B.;
- Gjesing, Annete P.;
- Hussain, Mulazim;
- Tufail, Muhammad;
- Saqib, Muhammad;
- Afshan, Kiran;
- Hansen, Torben
Publication type:
Article
Identifying the genetic causes of phenotypically diagnosed Pakistani mucopolysaccharidoses patients by whole genome sequencing.
Published in:
Frontiers in Genetics, 2023, v. 14, p. 01, doi. 10.3389/fgene.2023.1128850
By:
- Gul, Rutaba;
- Firasat, Sabika;
- Schubert, Mikkel;
- Ullah, Asmat;
- Peña, Elionora;
- Thuesen, Anne C. B.;
- Hussain, Mulazim;
- Staeger, Frederik F.;
- Gjesing, Anette P.;
- Albrechtsen, Anders;
- Hansen, Torben
Publication type:
Article
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
Published in:
Nature, 2013, v. 499, n. 7456, p. 74, doi. 10.1038/nature12323
By:
- Orlando, Ludovic;
- Ginolhac, Aurélien;
- Zhang, Guojie;
- Froese, Duane;
- Albrechtsen, Anders;
- Stiller, Mathias;
- Schubert, Mikkel;
- Cappellini, Enrico;
- Petersen, Bent;
- Moltke, Ida;
- Johnson, Philip L. F.;
- Fumagalli, Matteo;
- Vilstrup, Julia T.;
- Raghavan, Maanasa;
- Korneliussen, Thorfinn;
- Malaspinas, Anna-Sapfo;
- Vogt, Josef;
- Szklarczyk, Damian;
- Kelstrup, Christian D.;
- Vinther, Jakob
Publication type:
Article
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.
Published in:
Bioinformatics, 2013, v. 29, n. 13, p. 1682
By:
- Jónsson, Hákon;
- Ginolhac, Aurélien;
- Schubert, Mikkel;
- Johnson, Philip L. F.;
- Orlando, Ludovic
Publication type:
Article
Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes.
Published in:
PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0078575
By:
- Seguin-Orlando, Andaine;
- Schubert, Mikkel;
- Clary, Joel;
- Stagegaard, Julia;
- Alberdi, Maria T.;
- Prado, José Luis;
- Prieto, Alfredo;
- Willerslev, Eske;
- Orlando, Ludovic
Publication type:
Article
Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3943-8
By:
- Schaefer, Robert J.;
- Schubert, Mikkel;
- Bailey, Ernest;
- Bannasch, Danika L.;
- Barrey, Eric;
- Bar-Gal, Gila Kahila;
- Brem, Gottfried;
- Brooks, Samantha A.;
- Distl, Ottmar;
- Fries, Ruedi;
- Finno, Carrie J.;
- Gerber, Vinzenz;
- Haase, Bianca;
- Jagannathan, Vidhya;
- Kalbfleisch, Ted;
- Leeb, Tosso;
- Lindgren, Gabriella;
- Lopes, Maria Susana;
- Mach, Núria;
- da Câmara Machado, Artur
Publication type:
Article
African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-023-44105-1
By:
- Balboa, Renzo F.;
- Bertola, Laura D.;
- Brüniche-Olsen, Anna;
- Rasmussen, Malthe Sebro;
- Liu, Xiaodong;
- Besnard, Guillaume;
- Salmona, Jordi;
- Santander, Cindy G.;
- He, Shixu;
- Zinner, Dietmar;
- Pedrono, Miguel;
- Muwanika, Vincent;
- Masembe, Charles;
- Schubert, Mikkel;
- Kuja, Josiah;
- Quinn, Liam;
- Garcia-Erill, Genís;
- Stæger, Frederik Filip;
- Rakotoarivony, Rianja;
- Henrique, Margarida
Publication type:
Article
Fast, Accurate and Automatic Ancient Nucleosome and Methylation Maps with epiPALEOMIX.
Published in:
Molecular Biology & Evolution, 2016, v. 33, n. 12, p. 3284, doi. 10.1093/molbev/msw184
By:
- Hanghøj, Kristian;
- Seguin-Orlando, Andaine;
- Schubert, Mikkel;
- Madsen, Tobias;
- Pedersen, Jakob Skou;
- Willerslev, Eske;
- Orlando, Ludovic
Publication type:
Article
Genomic Characterization of a South American Phytophthora Hybrid Mandates Reassessment of the Geographic Origins of Phytophthora infestans.
Published in:
Molecular Biology & Evolution, 2016, v. 33, n. 2, p. 478, doi. 10.1093/molbev/msv241
By:
- Martin, Michael D.;
- Vieira, Filipe G.;
- Ho, Simon Y. W.;
- Wales, Nathan;
- Schubert, Mikkel;
- Seguin-Orlando, Andaine;
- Ristaino, Jean B.;
- Gilbert, M. Thomas P.
Publication type:
Article
High‐Throughput DNA sequencing of ancient wood.
Published in:
Molecular Ecology, 2018, v. 27, n. 5, p. 1138, doi. 10.1111/mec.14514
By:
- Wagner, Stefanie;
- Lagane, Frédéric;
- Seguin‐Orlando, Andaine;
- Schubert, Mikkel;
- Leroy, Thibault;
- Guichoux, Erwan;
- Chancerel, Emilie;
- Bech‐Hebelstrup, Inger;
- Bernard, Vincent;
- Billard, Cyrille;
- Billaud, Yves;
- Bolliger, Matthias;
- Croutsch, Christophe;
- Čufar, Katarina;
- Eynaud, Frédérique;
- Heussner, Karl Uwe;
- Köninger, Joachim;
- Langenegger, Fabien;
- Leroy, Frédéric;
- Lima, Christine
Publication type:
Article
Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX.
Published in:
Nature Protocols, 2014, v. 9, n. 5, p. 1056, doi. 10.1038/nprot.2014.063
By:
- Schubert, Mikkel;
- Ermini, Luca;
- Sarkissian, Clio Der;
- Jónsson, Hákon;
- Ginolhac, Aurélien;
- Schaefer, Robert;
- Martin, Michael D;
- Fernández, Ruth;
- Kircher, Martin;
- McCue, Molly;
- Willerslev, Eske;
- Orlando, Ludovic
Publication type:
Article
Evolutionary Patterns and Processes: Lessons from Ancient DNA.
Published in:
Systematic Biology, 2017, v. 66, n. 1, p. e1, doi. 10.1093/sysbio/syw059
By:
- LEONARDI, MICHELA;
- LIBRADO, PABLO;
- DER SARKISSIAN, CLIO;
- SCHUBERT, MIKKEL;
- ALFARHAN, AHMED H.;
- ALQURAISHI, SALEH A.;
- AL-RASHEID, KHALED A. S.;
- GAMBA, CRISTINA;
- WILLERSLEV, ESKE;
- ORLANDO, LUDOVIC
Publication type:
Article
Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47015-y
By:
- Liu, Xiaodong;
- Lin, Long;
- Sinding, Mikkel-Holger S.;
- Bertola, Laura D.;
- Hanghøj, Kristian;
- Quinn, Liam;
- Garcia-Erill, Genís;
- Rasmussen, Malthe Sebro;
- Schubert, Mikkel;
- Pečnerová, Patrícia;
- Balboa, Renzo F.;
- Li, Zilong;
- Heaton, Michael P.;
- Smith, Timothy P. L.;
- Pinto, Rui Resende;
- Wang, Xi;
- Kuja, Josiah;
- Brüniche-Olsen, Anna;
- Meisner, Jonas;
- Santander, Cindy G.
Publication type:
Article
Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05290-6
By:
- Janečka, Jan E.;
- Davis, Brian W.;
- Ghosh, Sharmila;
- Paria, Nandina;
- Das, Pranab J.;
- Orlando, Ludovic;
- Schubert, Mikkel;
- Nielsen, Martin K.;
- Stout, Tom A. E.;
- Brashear, Wesley;
- Li, Gang;
- Johnson, Charles D.;
- Metz, Richard P.;
- Zadjali, Al Muatasim Al;
- Love, Charles C.;
- Varner, Dickson D.;
- Bellott, Daniel W.;
- Murphy, William J.;
- Chowdhary, Bhanu P.;
- Raudsepp, Terje
Publication type:
Article

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